Again sorry for forgetting you-
I have looked at you projects - Interesting -a bit chilling :p -And indeed big!
But on subject:
I noticed that you have some empty automation-tracks, both in 'working' and in 'messed-up' Are those meant to be empty?
Like in Bar 29 & 32 just under 'Klirrpiano'. Two empty blocks.
Does they have an automation-curve/pattern on your pc?
On mine it say "Ein Steuerelement mit <Strg> hier her ziehen"
Meaning this block is not connected to any dial at all
Can you give me name and bar position for some of the automation-tracks, that has failed to load correctly?
Just a pointer like the one i used above: Bar xx & yy just under/over 'xyz'.